Author Archives: Sharief Hendricks

Staying on Top of Things

by Sarah Mccarley

I have to be honest; I thought honours would be a breeze. This, however, is not the case! I always seem to have deadline, upon deadline, upon deadline. There are live lectures, assignments, presentations, project proposals, literature reviews, just to name a few.

The most helpful thing I have learnt is: keep up to date. The concept of “keeping up to date” seems obvious and easy but when there is no impending deadline, it is easy to just let the work pile up. However, when the deadline comes, which it is bound to do, the amount of work will be astronomical. 

Keeping up to date comprises two skills: time management and diligence. There will be a lot to get through each day so time management and prioritization are key. I find it helpful to make lists going from most important to least important. To keep up to date, you must be diligently putting the hours in each weekday (and even the weekend). And in the words of Dory, “just keep swimming”. You have to keep going if you want that degree.

There are two strategies that I employ to keep up to date : –

  • Attend all your lectures! I am a big believer in lectures. I do strongly think that even just attending the lecture increases your understanding and will contribute to a better mark (I have no evidence of this, but is the reason we go to university not to attend lectures?

Following on attending lectures is, having a reasonable understanding of the lecture material covered each day. I ensure my understanding of the lecture content by making notes on the day’s lecture and then going and asking the lecturer questions the next day if I have any. Keeping up to date with notes is also good to do.

  • Now, don’t forget about the other work: tutorials, practicals, practical write-ups, presentations, essays, thesis work. My advice is to try to smash them out on the weekend or if you have time during the week, try to do a little bit each day.

Finally, there are these amazing things called, reference managers. I highly recommend it! It is a tool to help you in-text reference and to generate the reference list at the end of the document. It can also store PDFs which is a great way to store all the articles/papers that you have read. Reference managers can automatically scan your paper/website (and I’m sure much more) and create the reference. 

Disclaimer: always check the reference was done correctly (yes, you will need to manually check the reference but it will still be quicker than making references yourself).

2020 – The year people changed?

by Kayleigh Gultig

People-watching? I am sure we have all participated in this hobby in one form or another, it is what makes days on the beach or meals at a restaurant so entertaining. The two girls laughing in a corner, the old man sipping from his wine glass or the uncontrollable children clambering over tables. Each stranger with his own story.

Human nature is a strange yet somewhat fascinating topic. It seems we possess a certain inherent selfishness and stubbornness to cling to what is comfortable. Even in the face of a global pandemic, it seems we are as determined as possible to revert to “normality”. Our mask wearing and social gathering antics seem unrelated to COVID cases and more a reflection of our desire to return to normality and what our friends think is right. We have seen the environmental benefits of travel restrictions and more self-sustainable living. When the threat is gone, will our CO2 emissions rise again? Will we continue to bake our own bread and care for veggie gardens? Or will we return to what is convenient?

Maybe the pandemic has been around for long enough for us to create new comfortable habits. The streams of people on the mountains and cycling or jogging on the streets since lockdown seems to be proof of our newfound appreciation for being active outdoors. The effort we put into relationships seems to have grown. Even the introverts have been making more time for people. So maybe there is hope? Will this be the year humanity begins to change?

Hope for the fight against obesity!

by Masechaba Sebabatso Tsotetsi

Obesity and obesity-associated type 2 diabetes have emerged as two of the major threats to human health in the 21stcentury. (1) In 2016 about 13% of the world’s adult population was obese. What’s even more shocking is the fact the prevalence of obesity is rapidly increasing in low- and middle-income countries where it used to be more prevalent in high-income countries. It was projected that by 2020 almost 1 in 10 children worldwide and 1 in 8 children in Africa will either be overweight or obese, which is quite worrying! Childhood obesity has been reported to be higher among South African Children. (2)

The consumption of an energy-rich, high-fat diet is known to trigger obesity and various metabolic changes including impaired glucose tolerance, insulin resistance and hyperglycemia. In this study the researchers wanted to investigate whether the deletion of the M₃ receptor gene could prevent or reduce the severity of these metabolic effects.

They found that consumption of a high-fat diet led to pronounced weight gain, hyperinsulinemia, impaired glucose tolerance and insulin resistance in the M3R wild-type mice but these metabolic deficits, induced by the consumption of the high-fat diet, were largely absent in the M3R knockout mice. They also observed that the M3R knockout mice maintained on a regular or high-fat diet consumed significantly less food than the M3R wild-type mice. Also, independent of the type of diet that the mice consumed, M3R knockout mice showed significantly increased rates of resting and total energy expenditure and locomotor activity. These results are shown in figure 1.

This paper shows that M3R knockout mice are largely protected against the detrimental effects metabolic deficits triggered by a high-fat diet, so the M₃ receptor may therefore represent a potential pharmacologic target for the treatment of obesity and associated metabolic disorders. So, there’s a bit of hope for the future.


  1. Dinesh Gautam, Oksana Gavrilova, Jongrye Jeon, Stephanie Pack, William Jou, Yinghong Cui, Jian H. Li, and Ju¨rgen Wess (2006) Beneficial metabolic effects of M3 muscarinic acetylcholine receptor deficiency. Cell metabolism4(5), 363-375.
  2. Olufunmilola Otitoola, Wilna Oldewage-Theron & Abdul Egal(2020) Prevalence of overweight and obesity among selected schoolchildren and adolescents in Cofimvaba, South Africa, South African Journal of Clinical Nutrition, DOI: 1080/16070658.2020.1733305

T regulatory cells CARRY AN address for their tissue fate.

By Mudau Nzumbululo Precious
T regulatory (Treg) cells are a subset of immune cells that play an important role of controlling immunological responses. Upon an infection, Treg cells dampen down the immune response to keep it in check and prevent chronic inflammation that could lead to tissue damage. Treg cells also prevent immune system from attacking its own tissues cells, hence avoiding autoimmune diseases. These cells, however, can be exploited in certain diseases and/or infection to evade the immune system leading to the development of cancerous tumours or chronic infections. A deeper understanding of the nature of circulating Treg cells and how they adapt   to specific tissue is important for implementing targeted therapy.

A recent study by Miragaia and colleagues has shown that Treg cells in non-lymphoid tissue (NLT) such as skin and colon expresses a unique set of genes that are required for tissue adaptation which are very different from Treg cells in the lymphoid tissue (LT: specialized immunological tissues) i.e. lymph nodes and spleen. In this study they were able to identifying unique genes that could map out Treg cell trajectories as they transit from a specific tissue to another and thus were able to predict the fate of the cells.

To achieve this the authors performed single cell RNA-sequencing (scRNA-seq) of 3500 CD4+ T cell collected from skin, colon and associated lymph nodes using the droplet based 10x genomics technique as shown in Figure 1.

This technique measured all the genes expressed by each individual T cells. Based on the genes each T cell expressed, they were able to group cells expressing similar genes into clusters of either Treg cells or memory T cells (Tmem – antigen experienced T cells) as shown in the Figure 1. Further examination of these cell clusters revealed high diversity of Treg cell populations within the NLT and LT.

Pseudotime ordering analysis,  an analysis that estimates the distance between cell transition states, was used to determine the trajectory of the Treg cells. Using this analysis ,transcriptomic adaptations occurring in Treg cells during their transition from the lymph node to non-lymphoid tissues could identify Treg cell subpopulations aligning in a continuous trajectory as shown in figure 2  and diverging towards their specific tissue fates carrying their respective address book e.g  branchial lymph node (bLN) Treg  (Lef1, Tcf7, Sell),  mesenteric lymph node (mLN) Treg (Nfil3, Ccr8, Cxcr6, Gzmb), skin Treg (Sell, Tcf7, Rora and Tnfrsf9), and colon Treg (Sell, Tcf7, Rora and Tnfrsf9). These finding provide an easy tool to determine the fate of Treg cells in circulation and also demonstrated that the adaptation of Treg cells migrating to skin or colon depend on a shared transcriptional trajectory.

Using a melanoma mouse model, they could also show that, the core identity of NLT Treg cells is conserved between mouse and human. This genomic approach reveals a dynamic adaptation of T cells as they traffic across tissues and provide an open resource for investigating in vivo CD4+ T cell phenotypes in mouse and human, to ultimately harness NLT CD4 T cells as future therapeutic target.

Figure 2. Pathway showing the transcriptomic adaptation of Tregs moving from lymph node to non-lymphoid tissues. A) In this plot the cells isolated from the different tissues sites are clustered based on the genes they express. B) The clustered are subseqeuntly alighned or ordered based on the diversity of the genes they express which assumes their tranistional state as they adapt to a different tissue using a model called BGPLVM (Bayesian Gaussian Process Latent variable Modeling); ( top graph show the Mln and colon; bottom graph the Bln and skin). C) Summarises the tracterory of Treg cell adaption from LT to NLT tissues.


Miragaia, R. J. et al. (2019) ‘Single-Cell Transcriptomic of Regulatory T Cells Reveals Trajectories of Tissue Adaptation Resource Single-Cell’, pp. 493–504. doi: 10.1016/j.immuni.2019.01.001


HIV-associated cardiovascular diseases: Is there a link between HIV and CVD?

By Jodie Jacobs

A question on the rise is whether HIV has a direct correlation on cardiovascular disease.  The emerging prevalence of cardiovascular diseases (CVD) present in HIV-infected patients is particularly interesting. People infected with HIV who die from cardiovascular complications is rising in comparison to people who die as a result of the virus itself. So, what does this mean?  Testing individuals who are HIV-positive for heart diseases and defects will help improve treatment and management regimes for those suffering from both diseases. In turn, this will lower the death rate caused by the world’s leading cause of death, cardiovascular disease. In this particular study, researchers investigated the prevalence and range of heart diseases in children in the Pediatric Infectious Disease clinic at Mulago Hospital in Sub-Saharan Africa where more than 50% of the world’s HIV-infected individuals reside.

Using imaging techniques, 230 children (112 males and 118 females) were examined where 13.9% had asymptomatic HIV, 67.8% had AIDS related complex and 18.3% had AIDS. Any structural defects relating to congenital heart disease, dimensions of heart chambers during relaxation and expansion, function of left ventricle, valve function and direction of blood flow were examined.

Of the 230 patients, 81.7% of patients were symptomatic for HIV while 18.3% were asymptomatic. The range of heart defects detected included Left ventricular systolic dysfunction (failure of heart to pump sufficient blood), right ventricular dilatation (chamber enlargement), pericardial effusion (excess fluid in pericardial cavity), congenital heart disease, dilated cardiomyopathy (ineffective pumping of blood), right and left  ventricular hypertrophy (thickening of heart wall), partial right bundle branch block and sinus tachycardia (elevated heart rhythm) with sinus tachycardia (25.53%) and left ventricular systolic dysfunction (21.28%) being the most significant. Only 5 children presented with cardiac abnormalities prior to the investigation. Other abnormalities included atrial septal defect (hole in the heart wall between two chambers) and mitral valve disease (partially functioning mitral valve).

Now the question would be what is the link between the two? Well, this study looked at the development and signs of heart defects in HIV-positive children who had no previous signs or complications. Cardiovascular abnormalities such as sinus tachycardia and left ventricular systolic dysfunction were found to be most prevalent in children with AIDS compare to those with ARC and who were asymptomatic. The direct effect which HIV has on cardiac abnormality development is yet to be established but a famous theory includes the role HIV plays in immune activation and inflammation that contributes to CVD risk and abnormalities. Countries in Sub-Saharan Africa where HIV is highly prevalent appears to increase the prevalence of cardiac abnormalities which may increase mortality rate. So, it is recommended that children suffering from HIV and ARC should be screened for any cardiovascular abnormalities as it will assist in effective treatment procedures and disease management.


Lubega S, Zirembuzi GW, Lwabi P. 2005. Heart disease among children with HIV/AIDS attending the paediatric infectious disease clinic at Mulago Hospital. African health sciences5(3): 219-226.

The etiology of Carpal Tunnel Syndrome

by Noluthando Magubane

Carpal tunnel syndrome (CTS) is the most common median nerve neuropathy that was first described by Paget in 1854. It is a medical condition caused by damage to the median nerve due to compression and traction of the nerve at the level of the carpal tunnel. This condition affects 4-5% of the population and is most prevalent in females around the ages of 40-60 but males are also susceptible to this condition (average age of 45-60). It is characterised by pain, numbness or a tingling sensation in the affected hand and arm.

The carpal tunnel is an osteofibrous outlet lying between the transverse carpal ligament (the intermediate part of a fibrous connective tissue band called the flexor retinaculum) which forms the roof, and the carpal bones that form the floor of the tunnel. Entering through the tunnel are nine flexor tendons and the median nerve. The median nerve enters the tunnel through the midline of or slightly radial (closer to the thumb) and innervates the first three radial digits and the radial half of the 4th digit, it also gives off a palmer sensory cutaneous branch which innervates the cutaneous skin of the palm these are the areas affected in CTS.

The pathophysiology of carpal tunnel syndrome involves an increased pressure within the carpal tunnel that decreases the function of the median nerve. Conditions that lead to compression of the carpal tunnel and hinders mobility, create lesions on the median nerve when the wrist is moved. Hypertrophy of the synovial tissue of the flexor tendons is a possible cause, in this condition constructive scar tissue is formed around the median nerve compressing it and increasing the pressure around the nerve resulting in tearing. The issue causing CTS could also originate at the nerve itself when the connective tissue surround the nerve becomes stiff. The purpose of this connective tissue is for the nerve to be extendable and not become injured when the wrist is moved. The stiffness exposes the nerve to shearing forces that could harm the nerve.

Risk factors associated with CTS can be medical or occupational. Medical factors include extrinsic factors such a fracture in the distal radius that increase the volume of the synovial sheath within the tunnel, intrinsic factors where tumours form in the tunnel increasing the occupied volume and neuropathic factors such as diabetes or alcoholism that can affect the function of the median nerve. Occupational risk factors involve any repetitive wrist movement or repetitive tasks such as typing. CTS can be treated by resting the affected hand and surgical interventions are also possible.


Aboonq, M. (2015) Pathophysiology of carpal tunnel syndrome. Neurosciences. 20 (1), 4–9.

Another way to tackle obesity besides lifestyle modifications?

by Sithandiwe Dlamini 

According to the South African Demographic and Health Survey 2016, 68% of women and 39% of men aged 15 and older were overweight or obese. According to the World Health Organisation 2016, 39% of adults aged 18 and over were overweight, while 13% were obese. This is significant as obesity contributes to diseases such as diabetes. It’s development is influenced by lifestyle (diet, physical inactivity), family history and genetic predisposition.

However, the gut microbiome is very likely to play an important role as the development of obesity-related disorders are strongly linked to the human gut microbiome. More specifically, the bacterium Akkermansia muciniphila has interested researchers. Why A. muciniphila? In rodents treated with this bacterium, there was a reduction in obesity and related disorders such as insulin resistance and glucose intolerance. However, its administration and effects had never been investigated in humans.

Recently, an exploratory, proof of concept study in the form of a randomised, double-blind placebo-controlled pilot study was done in overweight/obese, insulin-resistant participants. This was for the supplementation of A. muciniphila in humans. The participants were randomised to either receive the placebo, live or pasteurized A. muciniphila for 3 months, while maintaining their normal diet and physical activity. Metabolic parameters such as insulin sensitivity and insulin resistance were measured.


As seen in the graphs above, live and pasteurized A. muciniphila significantly reduced insulin resistance by reducing the insulin resistance score while pasteurized A. muciniphila significantly improved the insulin sensitivity index.

The above study showed that supplementation with A. muciniphila improved insulin sensitivity and insulin resistance Improvement in these metabolic parameters was associated with the impact of supplementation on body weight, fat mass and hip circumference. The study shows that A. muciniphila can be administered to humans and is safe. It provides the foundation for further clinical research with larger sample sizes and more standardized and accurate ways of measurement. It has the potential use for future clinical interventions for obesity-related disorders in conjunction with lifestyle interventions. A patent has been registered for the use of A. muciniphila in treating metabolic conditions, proving its utility as a therapeutic


Plovier H, Everard A, Druart C, Depommier C, Van Hul M, Geurts L, et al. A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice. Nat Med. 2017;23(1):107–13.

Depommier C, Everard A, Druart C, Plovier H, Van Hul M, Vieira-Silva Set al. Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study. Nature Medicine.2019;25(7):1096-1103.

Cani P, Everard A, Belzer C, de Vos WM. Use of Akkermansia for treating metabolic disorders field. Belgium; PCT/EP2012/073011, 2014.

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