• By Abi Milella
    This reflective writing piece is supposed to be on my experience in honours so far and while I will get to that, I feel it’s only right for me to explain how I got here with the hopes of offering comfort to those who still have no idea where they’re going.

    It’s 2021 and university applications are due in a week and I have 0 idea of what I want to do. The Covid-19 pandemic showed me that I definitely did not want to be a doctor and now I was stuck, I’d been so sure that I wanted to follow in my moms footsteps that I hadn’t even considered a back up plan… A bachelor of Science seemed to be the most logical pivot from doctor to unknown and all that was left to do was choose my majors. I immediately found Human Anatomy and Physiology (HUB) and clicked “yes” and then had one last decision to make – major number 2. At this point the decision fatigue hit hard and I was far less enthusiastic about the whole application process and just wanted it to be over and done with so when my eyes skimmed over the major options again, they landed on the major with the acronym “GEN” which in my exhausted state, was interpreted as “general” and I figured “sure, that’s probably ideal for someone who’s not too sure about what they want to do.” right? Fast forward through my acceptance and campus tour to my first meeting with a student advisor who informed me that I had in fact signed up for genetics with a knock-on effect of changing HUB to Biochemistry as it was more synchronous with the Genetics content which had suddenly piqued my interest. I am forever grateful for that Student Advisor (whose name I cannot remember…) because it was the Biochemistry syllabus in second semester of my final year of my undergrad that showed me where I wanted to go (after 2 and a half years of not knowing and experiencing an increasing number of freak outs). Luckily for me this coincided with honours application deadlines and after falling in love with immunology, the MedSci Hons Infectious Diseases and Immunology was my one and only choice! The waiting and wondering period was possibly one of the most uncomfortable periods of my life and I caught myself regretting getting my hopes up, kicking myself for not investigating other routes better until I received my acceptance and I was absolutely elated!


    Although I had no idea what an honours year could look like, there was nothing that could bring me down from my cloud 9. The honours students of 2024 put in a good effort though… from day 1, all I heard was “congratulations, this is so exciting, this is going to be the worst year of your life”… not exactly comforting words to be hearing at the start of an unknown journey. But I figured, whatever, they’re probably trying to scare us straight and I made it about half way through the first semester before I started to see how right they were. Deadline after deadline, 3 hour long lectures, project selection and ethics applications, field trips, exams covering 600 slides…. It all felt like it was too much to handle and to be honest it was but you learn quickly that honours will show you how resilient you are and how much you can handle. To future MedSci honours students – this year will suck but you will prevail, I promise!


    Moving into the second semester, I am incredibly excited! No more lectures or exams and an exciting project ahead! My project selection process mimicked that of every other important choice that I have already mentioned – I rushed ahead and tunneled vision without stopping to consider the other options. I was swayed by a 2024 honours/2025 Msc student who whispered sweet nothings to me about the project running in her lab and I latched onto it and wished for it to be mine with all my heart.

    The night before project selections were due, I sat on my computer and considered how sure I was that this project was the “one”. Earlier that day, another masters student had painted a far more real picture of what that project would look like and I realised that it was not what i was interested in and so I sat until 2am watching the videos that each supervisor had made with such care (for the first time) and made a complete 180 on my project selection choice. I was awarded my first choice and as I sit in my lab office, I couldn’t be more excited for what’s to come, not only for the rest of the year but for the next chapter of my life. I have discovered a newfound interest, the human gut microbiome, and am extremely privileged to be working under experts in the field who feed my fascination daily!


    If there’s one thing this rollercoaster of a journey has taught me, it’s that things really do have a way of working out, even if the path looks nothing like what you expected. From clicking on “GEN” by mistake to late-night decision-making and second guesses, every twist led me exactly where I needed to be. Honours has challenged me in ways I never imagined, but it’s also shown me the power of resilience, the importance of trusting my gut (pun intended), and the value of keeping an open mind. So to anyone who feels lost or uncertain, know that it’s okay not to have it all figured out. Just take the next step, stay curious, and believe in your ability to adapt. Sometimes, the best decisions are the ones you never meant to make.

  • By Abi Milella

    The gut microbiome was once seen as a mysterious and untouchable ecosystem but it is now being increasingly recognised as a central player in nearly all aspects of human health. It influences everything from digestion and immunity to mental well-being and chronic disease. Understanding and harnessing the gut microbiome could transform how we treat and prevent disease.


    The human gut consists of trillions of bacterial cells that all coexist as a peaceful and balanced community that benefits us as their host – these are the good bugs and we need them. Any disruption in this balance leads to gut chaos and crappy consequences… The gut’s oxygen-free environment, its complexity and limited accessibility make it extremely challenging to treat disorders and identify the key microbes. Current treatments leave much to be desired. Probiotics are only as effective as the number of cultures that actually reach the gut, which is difficult to control, and the success of the establishment of colonies is even more uncertain. Fecal Microbiota Transplants are as gruesome as they sound involving the direct transplantation of human fecal matter from a healthy individual to an individual with an unhealthy gut microbiome – yikes. While often successful, they carry risks, and the difficulty of managing all variables is pushing scientists to develop more controlled treatments.


    Enter: Synthetic Microbial Communities – a hand-picked collection of microbes designed in the lab to mimic the functions of a natural microbiome. Much like coaches picking their best players to win a game, scientists build “teams” of bacteria that work together to study gut functions or treat gut disorders. I like to imagine scientists designing SynComs the way I used to play with Barbies, mixing and matching to see which bacteria work well together and which don’t.


    SynComs have many cool uses and are fast becoming the go-to tools for studying gut functions. In medicine, they are being tested to treat gut infections, inflammatory bowel disease and even metabolic issues. In research, SynComs are being used in germ-free mice (devoid of all microorganisms) to study gut functions, immunity, and how drugs (such as antibiotics), diet and nasty bugs affect the microbiome. The future of SynComs is bright and heading towards personalised designs and compositions that are tailored to individual microbiomes or for specific diseases. I can picture it now, soon we’ll be picking bacteria from a menu, just like at brunch, to build-a-gut that suits us perfectly! Synthetic Microbial Communities (SynComs) offer an exciting, controllable and adaptable alternative to traditional gut treatments. By carefully selecting and combining bacterial strains with specific beneficial functions, scientists are essentially engineering “dream teams” of microbes to improve gut health. The idea of “build-a-gut” might sound silly now, but it represents the beginning of the journey of SynComs and their role in shaping the future of gastrointestinal medicine.

  • By Chloe Ash

    Coming from a BSc and transferring into Medicine in my final year, then deciding to go back into research was daunting. Being a part of the intercalated tract meant that not only would I be adding more years to my studies and leaving my friends behind, but I also had immense impostor syndrome. What if I wasn’t smart enough to get into Molecular Medicine? I did it. What if that was a mistake, and I can’t get into the Honours programme? I did it. What if I can’t keep up with the complicated concepts in my modules? I did it. What if I can’t make new friends this year? I did it. I’ve made great friends who have supported me more than I could imagine this year. From making me feel like we were on the same page, to giving me the confidence I need to speak up in class, no matter how silly I think a question or answer is. I am grateful for taking the leap and making the most of this opportunity. I hope to see research translate into clinical spaces and encourage my peers to see their research through to execution. The connection between research and clinical practice is all the more meaningful when you get to experience the two worlds and watch them overlap. I have enjoyed this new experience in the laboratories and have found a new appreciation for the wonders of the human body. This year has sparked a new passion and resilience in me that I will carry throughout my medical years. 

  • by Chloe Ash

    Cancer has long outsmarted our best treatments, developing resistance through rapid mutations and hijacking the body’s defenses. One of these treatments is immunotherapy, which can activate, recruit or inhibit suppression of important immune cells to target cancerous cells and enhance the anti-tumour response. 

    Key players in this response include:

    Cytotoxic T-cells (CD8+ T-cells) fight against foreign cells, such as cancerous cells. 

    Dendritic cells present antigens to T-cells to activate them and induce an anti-tumour response. Regulatory B-cells and T-cells (Bregs and Tregs) bind to immune checkpoints, resulting in the suppression of immune cells to prevent unnecessary overactivation.  

    Previous work by this group showed that an active lung infection in mice caused immune cells to move away from a tumour site and to the site of infection. This informed their current work, where they challenged mice with lung melanomas (lung Ca) and administered active influenza virus intranasally. Interestingly, mice withoutan active lung infection had both significantly higher lung cancer-specific and overall mortality when compared to those with both disease states. However, these results did not translate to skin melanomas when the virus was administered intratumorally, presumably because the virus could not infect skin cells and thus engage the necessary immune response as seen in the lung. 

    Additional tests showed that an active infection was not necessary to achieve these results. Using the influenza vaccine containing the inactivated virus, they observed an increase in immune cells in the tumour microenvironment, where there was previously no infiltration, resulting in a decrease in tumour size. In short, they successfully converted a cold tumour to a hot one! Now, coupled with the use of immunotherapy, specifically a PD-L1 checkpoint inhibitor, the tumour size was significantly decreased and sustained. Not only is this groundbreaking in cancer therapy, but intratumoral administration of the vaccine maintains its protective effects against the influenza virus. 

    These results offer a promising new avenue in overcoming immunologically cold tumours and sensitising them to immunotherapy through repurposing a commercially available vaccine that is safe, affordable and easily accessible. It seems that scientists may need to step out of the laboratories and search our pharmacies for innovative solutions with what we have! 

    References:

    J.H. Newman, C.B. Chesson, N.L. Herzog, P.K. Bommareddy, S.M. Aspromonte, R. Pepe, R. 

    Estupinian, M.M. Aboelatta, S. Buddhadev, S. Tarabichi, M. Lee, S. Li, D.J. Medina, E.F. Giurini, 

    K.H. Gupta, G. Guevara-Aleman, M. Rossi, C. Nowicki, A. Abed, J.W. Goldufsky, J.R. Broucek, R.E. Redondo, D. Rotter, S.R. Jhawar, S. Wang, F.J. Kohlhapp, H.L. Kaufman, P.G. Thomas, V. Gupta, T.M. Kuzel, J. Reiser, J. Paras, M.P. Kane, E.A. Singer, J. Malhotra, L.K. Denzin, D.B. 

    Sant’Angelo, A.B. Rabson, L.Y. Lee, A. Lasfar, J. Langenfeld, J.M. Schenkel, M.J. Fidler, E.S. 

    Ruiz, A.L. Marzo, J.S. Rudra, A.W. Silk, 

    & A. Zloza, Intratumoral injection of the seasonal flu shot converts immunologically cold tumors to hot and serves as an immunotherapy for cancer, Proc. Natl. Acad. Sci. U.S.A. 117 (2) 1119-1128, https://doi.org/10.1073/pnas.1904022116 (2020).  

  • by Israel Oyebade

    Researchers at the National Institute of Allergy and Infectious Diseases (NIAID) in the United States have shown that topical treatment with a skin bacterium could offer lasting relief for patients with atopic eczema (AE). The group tested the efficacy of topical application of Roseomonas mucosa, a member of the normal skin microbiota, in AE patients and found that it reduced their disease severity, topical steroid requirement, and overgrowth of Staphylococcus aureus, a problematic bacterium in these patients. 

    Atopic eczema (also atopic dermatitis) is a chronic allergic disease of the skin marked by dryness, crusting, inflammation and itchiness. It affects about 2-3% of adults and up to 15-20% of children globally. It is caused by an interplay between poor skin barrier function, infectious or environmental agents, and immune dysregulation. It has no cure, but treatments include steroids, moisturizers and other topical drugs such as calcineurin inhibitors. These treatments, however, require daily application and lead to significant costs on affected families. 

    “All of the available therapies really just address the host side of the equation”, says Dr. Ian Myles, a coauthor of the study. “So, what we really wanted to ask was whether manipulating the microbiome might provide benefit to patients, and what kind of environmental factors might contribute to this bacterial imbalance”.  

    The microbial communities on various body surfaces – the microbiota – are ideally composed of beneficial microbes which promote optimal functioning of body systems. These communities may be disrupted, allowing the establishment of more pathogenic ones that promote inflammation and increase disease susceptibility, a state termed dysbiosis. The profound influence that these microorganisms have on host physiology has led to the development of interventions, such as probiotics, that are aimed at restoring the beneficial microbes. 

    “We were able to identify a species of bacteria, Roseomonas mucosa, which in cell cultures and in mouse models was able to kill Staph aureus, which is a bacterium known to exacerbate the disease, and fix some of the immune imbalances that would be associated with atopic dermatitis”, Myles says. 

    In an open-label, phase 1 clinical trial, 10 adult and 5 paediatric AE patients were enrolled.  The patients’ overall disease severity, as well as that of the antecubital region, the spot in front of the elbow where treatment would be administered, was measured and assigned a SCORAD value. A predetermined number of live R. mucosa cells suspended in sucrose solution was self-administered by the patients twice weekly. 

    This course lasted 6 weeks for the adults, followed by a 4-week washout period. For the younger participants, it continued for 12 weeks, followed by treatment every second day from weeks 13-16. The paediatric group’s washout period was 8 months. During the treatment course, all patients were to continue taking their usual eczema treatments as well. However, by the end of the washout period, the steroid-sparing effects of R. mucosa were evident. 

    Treatment was associated with significant reduction in intensity, regional itchiness and antecubital-specific SCORAD. Some patients also experienced responses outside the antecubital region, since they could treat an additional area of their choice. However, treatment of the hands was not associated with clinical benefit, even in patients with antecubital improvement. The authors suggest that this could be due to environmental exposures on the hands that promote dysbiosis, such as increased contact with topical antimicrobials. In addition, no patients had adverse reactions. 

    Previous clinical studies on eczema had noted placebo effects of up to 30%, leading to agreement that only improvements greater than 50% were statistically suggestive of treatment activity. In this study, 10 of the combined 15 patients reached this threshold, for regional or total SCORAD. All the adult patients who appeared responsive to treatment reported sustained or even additional improvement after the washout phase. The washout phase for the paediatric group is ongoing. 

    “Then we went from the microbiome and started to look at some of the environmental factors that might create this imbalance in your skin bacteria”, said Dr. Myles. “And we found that certain preservatives that can be found in lotions and creams and soaps, even some of the things that you might use to treat atopic dermatitis actually killed the healthy strains of Roseomonas, while allowing for the growth of disease-associated strains and Staph aureus”. 

    The group grew bacteria on disks impregnated with substances like parabens, which the patients may be exposed to. Some of these substances inhibited the growth of healthy R. mucosa strains more than S. aureus. However, the authors cautioned that more studies are needed to clarify the exposures that promote the dysbiosis linked to eczema, and that no causal link between the tested substances and eczema symptoms, or even dysbiosis, can be inferred from their results. 

    In their preclinical study, Myles and colleagues had shown in cell models that healthy strains of R. mucosa improved barrier function, innate immune activation, and through lipid secretions, inhibited S. aureus. They also found that it improved outcomes in a mouse model of atopic eczema. The group believes that the bacterium may be providing benefit through various mechanisms that target epithelium function, immune balance, and S. aureus growth. 

    The research group’s probe into benefits of this bacterium is one of many efforts to understand how the microbiome can be harnessed for human health. While Myles’ group and others are interested in developing microbiota-based therapeutics, the benefits of the microbiome also extend to diagnostics and the prevention of disease. It is surprising that our bodies do not just consist of us, but are ecosystems themselves, with relationships that may be quite useful. 

    “Although these early results are promising, we’re going to need a large-scale, placebo-controlled trial to really establish this therapy” 

    “The major appeal of this is that its going to be inexpensive, because you can literally grow the drug. But one of the other things that would be exciting is if you could colonize the patient”, Myles said.  “If we are able to set up colonization, what that could mean is that by intervening early, you could spare the patient years of daily therapy.”  

    References

    Ian A. Myles, et al. (2018). First-in-human topical microbiome transplantation with Roseomonas mucosa for atopic dermatitis. JCI Insight, 1-13.

    Ian A. Myles, et al. (2016). Transplantation of human skin microbiota in models of atopic dermatitis. JCI Insight, 1-10.